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Sharing & Sustaining Ecosystem Data

          Professors Stuart Phinn and Andrew Lowe
          TERN - Associate Science Directors


TERN Office: T. Clancy, A. Specht., E. Cuffe, C. Lange, B. Morris, M. Widdowson, Y. Li.,
S. Guru, S.Long, R, Christensen and P. Runting
International Partners




                TERN is supported by the Australian Government through
                the National Collaborative Research Infrastructure Strategy
                and the Super Science Initiative
Presentation Aims
  To demonstrate how TERN is used to enable:

- improved use and re-use of data;

- improved collaboration to address key questions;

- greater collective influence on ecosystem science
  and management in Australia.
Presentation Outline
1. Introduction –data sharing and increasing knowledge!

2. How does TERN work?

3. Science application examples from TERN

4. Where to from here….open data, papers, etc….?
Presentation Outline
1. Introduction –data sharing and increasing knowledge!

2. How does TERN work?

3. Science application examples from TERN

4. Where to from here….open data, papers, etc….?
Data sharing and increasing knowledge
•   The Research data lifecycle ?:



                                          Ecosystem
                                           Science
Data sharing and increasing knowledge

                                   Ecosystem
                                    Science
                                                       Research Question
                 Research Output

                                                        Proposal and Funding
Data Processing, Analysis,
Integration and Synthesis.                                  Researcher(s) and
                                                            Data Collection

       TERN Data Portal
       +License + Identifier
                               Data Sets + Meta-data
Data sharing and increasing knowledge
•   Provide resources for data: collection, storage, search and sharing
•   Data are checked and able to be (re-)used
•   Demonstrate return on research investment for agencies and researchers
Data sharing and increasing knowledge
Data sharing and increasing knowledge
Data sharing and increasing knowledge
Data sharing and increasing knowledge
•   Enable a change in data collection and research practices in Australia
Data sharing and increasing knowledge
•   Enable a change in data collection and research practices in Australia
Data sharing and increasing knowledge
•   Enable a change in data collection and research practices in Australia
Main recommendations:

                                            •Collect more data on Australia’s
                                            ecosystems and make it freely available

                                            • Engage the community in data collection

                                            • Develop methods to determine the
                                            consequences of ecosystem decisions and
                                            make these accessible to all stakeholders

                                            •Involve all stakeholders in ecosystem
                                            planning and decision making




Source: http://www.science.org.au/events/thinktank/thinktank2011/index.html
Data sharing and increasing knowledge
•   Enable a change in data collection and research practices in Australia
Presentation Outline
1. Introduction –data sharing and increasing knowledge!

2. How does TERN work?

3. Science application examples from TERN

4. Where to from here….open data, papers, etc….?
How does TERN work : Environments covered




   Source: NASA and Chuvieco and Huete(2009): Fundamentals of satellite remote sensing. Taylor and Francis
How does TERN work : Links to other data collections
How does TERN work : Infrastructure?
Fundamental infrastructure for collecting, storing and sharing data sets and
knowledge for Australian ecosystems.




Builds on past and current data collection activities across all levels of
government, research organisations, universities, private companies and non-
government organisations.
How does TERN work : Data collection and storage
How does TERN work : the concept…….




      Data Portal

       Meta-data - 1
      Identifier - DOI
       Use Licence
        Data Sets
How does TERN work : Linking data portals
•    The Research data licencing:
How does TERN work : the concept…….
                         TERN Data Discovery Portal

                                Meta-data
                           from all Data Portals



      Data Portal                      Data Portal      Data Portal

       Meta-data - 1                  Meta-data - 2     Meta-data - 1
      Identifier - DOI               Identifier - DOI   Identifier - DOI
       Use Licence                     Use Licence       Use Licence
        Data Sets                      Data Sets           Data Sets
How does TERN work : Multi-Scale Plot Network
How does TERN work : Supersites
How does TERN work : Supersites
TERN Supersite: Robson Creek 25ha plot
Terrestrial Ecosystem Research
Network (TERN)

Single 25ha (500m x 500m) plot in
selectively logged upland rainforest.

Last logged in 1970

Trees >10 cm diameter identified,
mapped, and measured for height
& DBH




   CSIRO Rainforest plots: M. Bradford.
TERN Supersite: Robson Creek 25ha plot
TERN Supersite: Robson Creek 25ha plot
How does TERN work : Supersite Portal
How does TERN work : Supersite Portal
TERN Data Portals – Remote Sensing
TERN Data Portals – Energy + Gas Fluxes
TERN Data Portals – Coastal Data
TERN Data Portals – Ecological Survey Data




              Bladder Saltbush Atriplex vesicaria
TERN Data Portals – Integrated and Synthesised Data
Australia’s Terrestrial Ecosystem Research
Network:




                                             42
Presentation Outline
1. Introduction –data sharing and increasing knowledge!

2. How does TERN work?

3. Science application examples from TERN

4. Where to from here….open data, papers, etc….?
• TERN delivers fundamental research infrastructure:

A multidisciplinary, networked, national approach for
Carbon accounting and dynamics
   Improved field measurements                 Integrated field, satellite image
   techniques and cover across all             and modelling process to quantify
   ecosystems                                  Carbon dynamics for current and
                                               future scenarios


                                                  Transpiration




 More accurate satellite image                                                                      Total Net Primary Productivity


 maps of biomass and primary
 production                                                                                              Long-term continental water
                                                                                                         balance properties and Carbon
                                                 Soil Evaporation                                        balance using BIOS2, constrained
                                                                                                         by data including OzFlux data




                                     Source: Beringer, Hacker, Hutley, Arndt, Amiri, Bannehr, Cernusak, Grover, Hensley, Hocking, Isaac,
                                     Jamali, Kanniah, Leuning, Livesley, Neininger, Paw U, Sea, Stratten, Tapper, Weinmann, Wood, Zegelin
                                     (2011) SPECIAL – Savanna Patterns of Energy and Carbon Integrated Across the Landscape, Bulletin of the
                                     American Meteorological Society, Vol 92, 1467-1485.
• TERN delivers infrastructure for research and management:

      Continental scale monitoring of ecosystem and biodiversity
      stocks and changes for improved understanding and decisions
                                Tropical Savanna
   Spinifex Hummock Grassland                         Rain Forest



                                                                            Baseline monitoring of ecosystem
                                                                            disturbance and change drivers.
Acacia Shrubland                                   Eucalypt Open Woodland
                                                                            Combining field, satellite, nutrient
                                                                            cycling and biodiversity data for
                                                                            understanding change and improved
                                                                            management.
Tussock Grassland                                      Mulga Shrubland



                                                                            Integrating approaches along a
                                                                            continental transect to determine rate
     Chenopod Shrubland               Mallee
                                                                            of change and turn-over in ecosystems.



                                                   Tall Eucalypt Forest
• TERN delivers human infrastructure for integrating ideas:

Synthesizing understanding of major drivers, threats and new
ways to manage Australian ecosystems
                                                              Network of infrastructure to
                                                              support scientists and policy makers
                                                              to better understand drivers, rate of
                                                              change and improved management
                                                              of ecosystems:

                                                              •   Extinctions
                                                              •   Fire
                                                              •   Biogeography of continent
                                                              •   Invasives
                                                              •   Climate change
                                                              •   Landscape transformation
                                                              •   Ecosystem adaptation
                                                              •   Integration for national data sets
       Murphy BP, Bradstock RA, Boer MM, Carter J, Cary GJ,
                                                              •   International standards for data
       Cochrane MA, Fensham RJ, Russell-Smith J, Williamson
       GJ & Bowman DMJS (2012) Fire regimes of
       Australia, a pyrogeographic model system.
       Journal of Biogeography, In review March 2012.
Presentation Outline
1. Introduction –data sharing and increasing knowledge!

2. How does TERN work?

3. Science application examples from TERN

4. Where to from here….open data, papers, etc….?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Where to from here – Data publishing?
•   Existing data storage, publishing and sharing options?
Current investments and research infrastructure
 TOTAL TERN Government Funding                     TERN Office
    2009-2014 $49.73 million                       TERN Portal
                   2% 1% 0%                        ACEAS

                  4%        10%         3%         Auscover
             4%
                                                   Ozflux
        4%
                                         8%        Ecoinformatics

                                                   Supersite Demonstrators (FNQ x 2, SEQ x 3)
 13%                                               Long Term Australian Multi-Scale Plot System

                                                   Ausplots

                                             17%   Long Term Ecosystem Research Plot Network

   9%                                              Supersites

                                                   Scaling and Modelling

                                  10%              Soils and Landscape
       3%
                       9%                          ACEF
             3%
                                                   TERN Coordination
•   Enable a change in data collection and research practices in Australia

•   Data sharing infrastructure as part of national research fabric
TERN’s Future
• To become the standard for all ecosystem research data
  collection, storage and sharing .

• The “integration” facility for ecosystem data.

• Adoption within local to state and national governments.

• Basis for open data and cite-able data for ecosystem research in
  Australia.

• Requires long-term commitments from state and federal
  governments, universities and research organisations.
Your Data, Research Projects and Proposals
 • Data management plans

 • Data storage, curation and metadata for you and your group

 • Knowledge generation and sharing

 • Collaborations

 • Act and express our needs collectively
Questions?

TERN/Science       Stuart Phinn      s.phinn@uq.edu.au

TERN Director      Tim Clancy        t.clancy@uq.edu.au

TERN Portals       Siddeswara Guru   s.guru@uq.edu.au

ACEAS              Alison Specht     a.specht@uq.edu.au

Comms/Knowledge    Suzanne Long      s.long5@uq.edu.au
                   Bek Christensen   r.christensen1@uq.edu.au


          www.tern.org.au and tern@uq.edu.au

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Sharing & Sustaining Ecosystem Data

  • 1. Sharing & Sustaining Ecosystem Data Professors Stuart Phinn and Andrew Lowe TERN - Associate Science Directors TERN Office: T. Clancy, A. Specht., E. Cuffe, C. Lange, B. Morris, M. Widdowson, Y. Li., S. Guru, S.Long, R, Christensen and P. Runting
  • 2. International Partners TERN is supported by the Australian Government through the National Collaborative Research Infrastructure Strategy and the Super Science Initiative
  • 3. Presentation Aims To demonstrate how TERN is used to enable: - improved use and re-use of data; - improved collaboration to address key questions; - greater collective influence on ecosystem science and management in Australia.
  • 4. Presentation Outline 1. Introduction –data sharing and increasing knowledge! 2. How does TERN work? 3. Science application examples from TERN 4. Where to from here….open data, papers, etc….?
  • 5. Presentation Outline 1. Introduction –data sharing and increasing knowledge! 2. How does TERN work? 3. Science application examples from TERN 4. Where to from here….open data, papers, etc….?
  • 6. Data sharing and increasing knowledge • The Research data lifecycle ?: Ecosystem Science
  • 7. Data sharing and increasing knowledge Ecosystem Science Research Question Research Output Proposal and Funding Data Processing, Analysis, Integration and Synthesis. Researcher(s) and Data Collection TERN Data Portal +License + Identifier Data Sets + Meta-data
  • 8. Data sharing and increasing knowledge • Provide resources for data: collection, storage, search and sharing • Data are checked and able to be (re-)used • Demonstrate return on research investment for agencies and researchers
  • 9. Data sharing and increasing knowledge
  • 10. Data sharing and increasing knowledge
  • 11. Data sharing and increasing knowledge
  • 12. Data sharing and increasing knowledge • Enable a change in data collection and research practices in Australia
  • 13. Data sharing and increasing knowledge • Enable a change in data collection and research practices in Australia
  • 14. Data sharing and increasing knowledge • Enable a change in data collection and research practices in Australia
  • 15. Main recommendations: •Collect more data on Australia’s ecosystems and make it freely available • Engage the community in data collection • Develop methods to determine the consequences of ecosystem decisions and make these accessible to all stakeholders •Involve all stakeholders in ecosystem planning and decision making Source: http://www.science.org.au/events/thinktank/thinktank2011/index.html
  • 16. Data sharing and increasing knowledge • Enable a change in data collection and research practices in Australia
  • 17. Presentation Outline 1. Introduction –data sharing and increasing knowledge! 2. How does TERN work? 3. Science application examples from TERN 4. Where to from here….open data, papers, etc….?
  • 18. How does TERN work : Environments covered Source: NASA and Chuvieco and Huete(2009): Fundamentals of satellite remote sensing. Taylor and Francis
  • 19. How does TERN work : Links to other data collections
  • 20. How does TERN work : Infrastructure? Fundamental infrastructure for collecting, storing and sharing data sets and knowledge for Australian ecosystems. Builds on past and current data collection activities across all levels of government, research organisations, universities, private companies and non- government organisations.
  • 21. How does TERN work : Data collection and storage
  • 22. How does TERN work : the concept……. Data Portal Meta-data - 1 Identifier - DOI Use Licence Data Sets
  • 23.
  • 24. How does TERN work : Linking data portals • The Research data licencing:
  • 25.
  • 26.
  • 27. How does TERN work : the concept……. TERN Data Discovery Portal Meta-data from all Data Portals Data Portal Data Portal Data Portal Meta-data - 1 Meta-data - 2 Meta-data - 1 Identifier - DOI Identifier - DOI Identifier - DOI Use Licence Use Licence Use Licence Data Sets Data Sets Data Sets
  • 28. How does TERN work : Multi-Scale Plot Network
  • 29. How does TERN work : Supersites
  • 30. How does TERN work : Supersites
  • 31. TERN Supersite: Robson Creek 25ha plot Terrestrial Ecosystem Research Network (TERN) Single 25ha (500m x 500m) plot in selectively logged upland rainforest. Last logged in 1970 Trees >10 cm diameter identified, mapped, and measured for height & DBH CSIRO Rainforest plots: M. Bradford.
  • 32. TERN Supersite: Robson Creek 25ha plot
  • 33. TERN Supersite: Robson Creek 25ha plot
  • 34. How does TERN work : Supersite Portal
  • 35. How does TERN work : Supersite Portal
  • 36. TERN Data Portals – Remote Sensing
  • 37. TERN Data Portals – Energy + Gas Fluxes
  • 38. TERN Data Portals – Coastal Data
  • 39. TERN Data Portals – Ecological Survey Data Bladder Saltbush Atriplex vesicaria
  • 40. TERN Data Portals – Integrated and Synthesised Data
  • 41. Australia’s Terrestrial Ecosystem Research Network: 42
  • 42. Presentation Outline 1. Introduction –data sharing and increasing knowledge! 2. How does TERN work? 3. Science application examples from TERN 4. Where to from here….open data, papers, etc….?
  • 43. • TERN delivers fundamental research infrastructure: A multidisciplinary, networked, national approach for Carbon accounting and dynamics Improved field measurements Integrated field, satellite image techniques and cover across all and modelling process to quantify ecosystems Carbon dynamics for current and future scenarios Transpiration More accurate satellite image Total Net Primary Productivity maps of biomass and primary production Long-term continental water balance properties and Carbon Soil Evaporation balance using BIOS2, constrained by data including OzFlux data Source: Beringer, Hacker, Hutley, Arndt, Amiri, Bannehr, Cernusak, Grover, Hensley, Hocking, Isaac, Jamali, Kanniah, Leuning, Livesley, Neininger, Paw U, Sea, Stratten, Tapper, Weinmann, Wood, Zegelin (2011) SPECIAL – Savanna Patterns of Energy and Carbon Integrated Across the Landscape, Bulletin of the American Meteorological Society, Vol 92, 1467-1485.
  • 44. • TERN delivers infrastructure for research and management: Continental scale monitoring of ecosystem and biodiversity stocks and changes for improved understanding and decisions Tropical Savanna Spinifex Hummock Grassland Rain Forest Baseline monitoring of ecosystem disturbance and change drivers. Acacia Shrubland Eucalypt Open Woodland Combining field, satellite, nutrient cycling and biodiversity data for understanding change and improved management. Tussock Grassland Mulga Shrubland Integrating approaches along a continental transect to determine rate Chenopod Shrubland Mallee of change and turn-over in ecosystems. Tall Eucalypt Forest
  • 45. • TERN delivers human infrastructure for integrating ideas: Synthesizing understanding of major drivers, threats and new ways to manage Australian ecosystems Network of infrastructure to support scientists and policy makers to better understand drivers, rate of change and improved management of ecosystems: • Extinctions • Fire • Biogeography of continent • Invasives • Climate change • Landscape transformation • Ecosystem adaptation • Integration for national data sets Murphy BP, Bradstock RA, Boer MM, Carter J, Cary GJ, • International standards for data Cochrane MA, Fensham RJ, Russell-Smith J, Williamson GJ & Bowman DMJS (2012) Fire regimes of Australia, a pyrogeographic model system. Journal of Biogeography, In review March 2012.
  • 46. Presentation Outline 1. Introduction –data sharing and increasing knowledge! 2. How does TERN work? 3. Science application examples from TERN 4. Where to from here….open data, papers, etc….?
  • 47. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 48. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 49. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 50. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 51. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 52. Where to from here – Data publishing? • Existing data storage, publishing and sharing options?
  • 53.
  • 54. Current investments and research infrastructure TOTAL TERN Government Funding TERN Office 2009-2014 $49.73 million TERN Portal 2% 1% 0% ACEAS 4% 10% 3% Auscover 4% Ozflux 4% 8% Ecoinformatics Supersite Demonstrators (FNQ x 2, SEQ x 3) 13% Long Term Australian Multi-Scale Plot System Ausplots 17% Long Term Ecosystem Research Plot Network 9% Supersites Scaling and Modelling 10% Soils and Landscape 3% 9% ACEF 3% TERN Coordination
  • 55. Enable a change in data collection and research practices in Australia • Data sharing infrastructure as part of national research fabric
  • 56. TERN’s Future • To become the standard for all ecosystem research data collection, storage and sharing . • The “integration” facility for ecosystem data. • Adoption within local to state and national governments. • Basis for open data and cite-able data for ecosystem research in Australia. • Requires long-term commitments from state and federal governments, universities and research organisations.
  • 57. Your Data, Research Projects and Proposals • Data management plans • Data storage, curation and metadata for you and your group • Knowledge generation and sharing • Collaborations • Act and express our needs collectively
  • 58. Questions? TERN/Science Stuart Phinn s.phinn@uq.edu.au TERN Director Tim Clancy t.clancy@uq.edu.au TERN Portals Siddeswara Guru s.guru@uq.edu.au ACEAS Alison Specht a.specht@uq.edu.au Comms/Knowledge Suzanne Long s.long5@uq.edu.au Bek Christensen r.christensen1@uq.edu.au www.tern.org.au and tern@uq.edu.au