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Purine nucleotide can be synthesized by two
pathways….
De novo pathway (new synthesis from amphibolic
intermediates)
Salvage pathway
By phoshoribosylation of free purine bases and
By phosphorylation of purine nucleosides
In de novo synthesis, Purine nucleotides are
synthesized not the free purine bases.
Precursors for the de novo synthesis of purine
C2
C
6
N1
N
9
N
3
7
N
C5
C4
8C
Glutamine
Aspartate
Glycine
CO2
N10 Formyl
THF
N5 N10 Formyl
THF
In de novo synthesis, Purine ring is assembled on
ribose-5-phosphate, from a variety of precursors.
Reactions of de
novo synthesis
of purine
α-D-Ribose-5-phosphate
PRPP synthase
ATP
AMP
Phosphoribosylpyrophosphate (PRPP)
PRPP Glutamyl
amidotransferase
Glutamine
Glutamate
5-phospho-β-D-Ribosylamine
Phosphoribosyl
glycinamide synthase
Glycine + ATP
ADP+Pi
Glycinamide ribosyl-5-phosphate
Formyl transferase
N5, N10 – methenyl
THF
THF
H2O
PPi
Mg++
Mg++
Formylglycinamide ribosyl-5-phosphate
Synthase
Glutamate
ATP, Mg++
Glutamine
Formylglycinamidine ribosyl-5-phosphate
Synthase
ATP Mg++
Ring closure
5- Aminoimidazole ribosyl-5-phosphate
Carboxylase
CO2
5- Aminoimidazole carboxylate ribosyl-5-phosphate
Synthase
Aspartate + ATP
ADP+Pi
5- Aminoimidazole 4- succinyl
carboxamide ribosyl-5-phosphate
Formyl transferase
N10 – methenyl
THF
THF
5- Formylaminoimidazole
4- carboxamide ribosyl-5-phosphate
Cyclohydrolase
H2O
Inosine monophosphate
5- Aminoimidazole 4- carboxamide
ribosyl-5-phosphate
Adenosuccinate
lyaseFumarate
Conversion of IMP to AMP and GMP
Inosine monophosphate (IMP)
Adenylsuccinate
synthase
Aspartate
H2O
Adenylsuccinate
Adenosine monophosphate (AMP)
Fumarate
Adenylsuccinase
GTP, Mg++
IMP
dehydrogenaseNAD+
NADH + H+
H2O
Xanthosine monophosphate (XMP)
Glutamine
Glutamate
Guanosine phosphate
synthase
ATP
Guanosine monophosphate (GMP)
Formation of Purine Nucleoside Diphosphate
and Nucleoside Triphosphate
Nucleoside monophosphate
(AMP, GMP)
Nucleoside monophosphate
kinase
ATP
ADP
Nucleoside diphosphate
(ADP, GDP)
Nucleoside diphosphate
kinase
ATP
ADP
Nucleoside triphosphate
(ATP, GTP)
It is controlled by…
Concentration of PRPP
Feedback regulation
Concentration of PRPP
Increased conc. PRPP stimulates purine
nucleotide synthesis. Which in turn depends on…
Availability of ribose-5-phosphate and
The activity of PRPP synthase
α-D-Ribose-5-phosphate
PRPP
synthase
PRPP
phosphoRibosylamine
Glutamyl
amidotransferase
IMP
AMP GMP
ADP GDP
ATP GTP
-
-
--
-
-
++
Committed step
Definition-
The conversion of free purines to the
corresponding nucleotides directly.
Sources of Purine
The free purines are formed in the cells
during the metabolic degradation of nucleic
acids & nucleotides.
Also obtained from the dietary sources.
-
This pathway provides purine nucleotide for
the tissues which are incapable of their
biosynthesis by de novo pathway.
e.g. human brain has low levels of PRPP
amidotransferase, & also RBCs and
polynuclear leukocyte cannot synthesize 5-
phoshoribosylamine.
Therefore, these tissues depends on this
pathway for purine nucleotide synthesis.
This is much simpler & required less energy.
C
C
N
NN
N
C
C
C
NH2
C
C
N
N
H
N
N
C
C
C
NH2
P-O-H2C
O
Adenine phosphoribosyl
transferase
PRPP PPi
Adenine
AMP
Hypoxanthine
C
C
N
N
H
N
N
C
C
C
O
Hypoxanthine-Guanine
phosphoribosyl transferase
PRPP PPi
C
C
N
NN
N
C
C
C
O
P-O-H2C
O
IMP
Guanine
C
C
N
N
H
N
N
C
C
C
O
H2N
Hypoxanthine-Guanine
phosphoribosyl transferase
PRPP PPi
C
C
N
NN
N
C
C
C
O
H2N
P-O-H2C
O
GMP
Deoxyribonucleotides are synthesized by reduction of
ribonucleoside diphosphates (both purine & pyrimidine).
The –OH group on C2 of ribose is replaced by a H atom.
It is catalyzed by ribonucleotide reductase.
This enzyme is active only when cells have actively
synthesizing DNA (preparative to cell division).
The reaction also requires thioredoxin, thioredoxin
reductase and NADPH.
Ribonucleoside diphosphate
(ADP, GDP, CDP, UDP)
Ribonucleotide
reductase
Reduced
Thioredoxin
Oxidized
Thioredoxin
Deoxyribonucleoside diphosphate
(dADP, dGDP, dCDP, dUDP)
NADPH+H+NADP+
Thioredoxin
reductase
Purines (Adenine & guanine) are catabolised to
uric acid.
Purine Nucleotides are degraded by the pathway,
in which first phosphate group is removed by the
action of nucleotidase to give nucleoside.
Then it is further degraded to uric acid as
follows……
AMP
Nucleotidase
H2O
Adenosine
Adenosine
deaminase
H2O
NH3
Inosine
Xanthine oxidase
H2O H2O2
Xanthine
Xanthine oxidase
H2O
Uric acid
Hypoxanthine
Nucleotide
phosphorylase
Pi
GMP
Pi
Nucleotidase
H2O
Pi
Guanosine
Ribose-1-P
Nucleotide
phosphorylase
Pi
Ribose-1-P
Guanine
Guanase
H2O2
➢Xanthine oxidase contains FAD,
molybdenum and iron.
➢It is found in liver and small
intestine
➢X.O librates H2O2 which is
harmfull to the tissues.
➢Catalase convert H2O2 to H2O
Uric acid is the end product of purine catabolism.
At physiological PH uric acid is mostly present in
plasma as sodium urate which is in soluble form.
The normal blood level of uric acid is 3-7 mg/dl.
The daily excretion varies from 500-700mg.
It excreted in to ways…
Via Kidney: majority of uric acid is excreted via kidney
(uricosuria).
Via gut: Smaller amount of urate is excreted via gut,
where it broken down by bacteria.
Significance of Uric acid
Uric acid plays an important role as antioxidant.
It is very effective scavenger of free radicals.
Its antioxidant property can be compared with vitamin C
Due to ↓ U.A ExcretionDue to ↑ U.A synthesis
Secondary due toPrimary
idiopathic
✓Renal insufficiency
✓Metabolic acidosis
✓Lactic acidosis
✓Diabetes Mellitus
✓Starvation
✓ Unknown reason✓ PRPP synthetase
✓ PRPP amidotransferase
✓ HGPRTase
Secondary
due to
Primary
(genetic)
✓↑ Dietary intake
✓↑ Nucleic acid turnover
✓Various cancers Such as..
(Leukemia, polycythemia.)
✓Von Gierkes disease
Gout is a metabolic disease associated with overproduction
of uric acid.
An elevated serum uric acid conc. is known as hyperuricemia
In sever hyperuricemia, crystals of sodium urate get
deposited in the soft tissues, particularly in the joints.
Such deposits are commonly known as tophi.
This causes inflammation in the joints resulting in the
painful gouty arthritis.
Sodium urate or uric acid may precipitate in kidneys and
ureters that results in renal damage and stone formation.
Prevalence of gout is about 3 per 1,000 persons.
Mostly affecting males and post-menopausal womens are
also equally susceptible.
Tophi
Gout is of two type…
Primary gout
Secondary gout
Primary gout:-
It is an inborn error of metabolism due to defect in
enzymes of purine biosynthesis. Such as…
PRPP synthetase
PRPP amidotransferase
HGPRTase
Secondary gout:-
It is due various diseases causing increased synthesis or
decreased excretion of uric acid.
↑ Dietary intake
↑ Nucleic acid turnover
Various cancers Such as..
(Leukemia, polycythemia.)
starvation
Renal insufficiency
Lactic acidosis
Diabetes Mellitus
SecondaryPrimary (Genetic)
Due to enzyme defect Due to decreased
excretion
Due to increased
synthesis
✓Renal
insufficiency
✓Lactic acidosis
✓Diabetes Mellitus
✓↑ Dietary intake
✓↑ Nucleic acid turnover
✓Various cancers Such as..
(Leukemia, polycythemia.)
✓Starvation
✓Von Gierkes disease
✓ PRPP synthetase
✓ PRPP amidotransferase
✓ HGPRTase
Gout
(Hyperuricemia)
Secondary
Due to decreased
excretion
Renal insufficiency
Lactic acidosis
Diabetes Mellitus
Due to increased
synthesis
↑ Dietary intake
↑ Nucleic acid turnover
Various cancers
Starvation
Primary (Genetic)
Due to enzyme
defect in …
- PRPP synthetase
- PRPP
amidotransferase
- HGPRTase
Gout can be treated combination of nutritional
therapy and drug therapy.
Foods rich in nucleotides and nucleic acids such as
liver, coffeine and tea should restrict in the diet. And
also the alcohol.
Drug for the treatment of primary gout is allopurinol.
Allopurinol is structural analog of hypoxanthine that
competitively inhibits the enzyme xanthine oxidase.
Allopurinol acts as suicide inhibitor in this reaction.
It get oxidized to alloxanthine by XO.
Alloxanthine is more effective inhibitor of XO.
This leads to the accumulation of hypoxanthine and
xanthine. These two compounds are more soluble than
uric acid, hence easily excreaed in the urine.
It is due to the deficiency of enzyme HGPRTase.
It was first described in 1964 by Michael Lesch (a
medical student) and Wiliam L. Nyhan (his teacher).
It is an X-linked inherited disorder, that affect only
males.
In absence of HGPRTase, the salvage pathway is inoperative
and purine cannot reconverted to nucleotides; instead they
are degraded to uric acid.
And also cause the accumulation of PRPP, which stimulate
synthesis and degradation of purine.
This results in increased conc of uric acid in plasma and urine
Symptoms:-
Hyperuricemia
Neurological abnormalities such as…
Mental retadation
Aggressive behavior
Learning disability
Biting of fingers and lips (self-mutilation)
Gout
Urinary tract stones
Treatment:-
Allopurinol helps to reduces uric acid formation, has
no affect on the neurological manifestation in these
patients.
Purine Nucleoside phosphorylase deficiency:-
Purine Nucleoside phosphorylase deficiency is
associated with impaired T-cell function with normal
B-cell function.
In the cells of patients with this deficiency, dGTP
accumulates.
Like dATP, dGTP allosteric inhibits ribonucleotide
reductase.
Both are autosomal recessive disorders with
symptoms of recurrent and chronic infection.

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Biosynthesis of Purine Ribonucleotide, Gout

  • 1.
  • 2. Purine nucleotide can be synthesized by two pathways…. De novo pathway (new synthesis from amphibolic intermediates) Salvage pathway By phoshoribosylation of free purine bases and By phosphorylation of purine nucleosides In de novo synthesis, Purine nucleotides are synthesized not the free purine bases.
  • 3. Precursors for the de novo synthesis of purine C2 C 6 N1 N 9 N 3 7 N C5 C4 8C Glutamine Aspartate Glycine CO2 N10 Formyl THF N5 N10 Formyl THF In de novo synthesis, Purine ring is assembled on ribose-5-phosphate, from a variety of precursors.
  • 4. Reactions of de novo synthesis of purine α-D-Ribose-5-phosphate PRPP synthase ATP AMP Phosphoribosylpyrophosphate (PRPP) PRPP Glutamyl amidotransferase Glutamine Glutamate 5-phospho-β-D-Ribosylamine Phosphoribosyl glycinamide synthase Glycine + ATP ADP+Pi Glycinamide ribosyl-5-phosphate Formyl transferase N5, N10 – methenyl THF THF H2O PPi Mg++ Mg++ Formylglycinamide ribosyl-5-phosphate Synthase Glutamate ATP, Mg++ Glutamine Formylglycinamidine ribosyl-5-phosphate Synthase ATP Mg++ Ring closure
  • 5. 5- Aminoimidazole ribosyl-5-phosphate Carboxylase CO2 5- Aminoimidazole carboxylate ribosyl-5-phosphate Synthase Aspartate + ATP ADP+Pi 5- Aminoimidazole 4- succinyl carboxamide ribosyl-5-phosphate Formyl transferase N10 – methenyl THF THF 5- Formylaminoimidazole 4- carboxamide ribosyl-5-phosphate Cyclohydrolase H2O Inosine monophosphate 5- Aminoimidazole 4- carboxamide ribosyl-5-phosphate Adenosuccinate lyaseFumarate
  • 6. Conversion of IMP to AMP and GMP Inosine monophosphate (IMP) Adenylsuccinate synthase Aspartate H2O Adenylsuccinate Adenosine monophosphate (AMP) Fumarate Adenylsuccinase GTP, Mg++ IMP dehydrogenaseNAD+ NADH + H+ H2O Xanthosine monophosphate (XMP) Glutamine Glutamate Guanosine phosphate synthase ATP Guanosine monophosphate (GMP)
  • 7. Formation of Purine Nucleoside Diphosphate and Nucleoside Triphosphate Nucleoside monophosphate (AMP, GMP) Nucleoside monophosphate kinase ATP ADP Nucleoside diphosphate (ADP, GDP) Nucleoside diphosphate kinase ATP ADP Nucleoside triphosphate (ATP, GTP)
  • 8. It is controlled by… Concentration of PRPP Feedback regulation Concentration of PRPP Increased conc. PRPP stimulates purine nucleotide synthesis. Which in turn depends on… Availability of ribose-5-phosphate and The activity of PRPP synthase
  • 10. Definition- The conversion of free purines to the corresponding nucleotides directly. Sources of Purine The free purines are formed in the cells during the metabolic degradation of nucleic acids & nucleotides. Also obtained from the dietary sources.
  • 11. - This pathway provides purine nucleotide for the tissues which are incapable of their biosynthesis by de novo pathway. e.g. human brain has low levels of PRPP amidotransferase, & also RBCs and polynuclear leukocyte cannot synthesize 5- phoshoribosylamine. Therefore, these tissues depends on this pathway for purine nucleotide synthesis. This is much simpler & required less energy.
  • 12. C C N NN N C C C NH2 C C N N H N N C C C NH2 P-O-H2C O Adenine phosphoribosyl transferase PRPP PPi Adenine AMP Hypoxanthine C C N N H N N C C C O Hypoxanthine-Guanine phosphoribosyl transferase PRPP PPi C C N NN N C C C O P-O-H2C O IMP Guanine C C N N H N N C C C O H2N Hypoxanthine-Guanine phosphoribosyl transferase PRPP PPi C C N NN N C C C O H2N P-O-H2C O GMP
  • 13. Deoxyribonucleotides are synthesized by reduction of ribonucleoside diphosphates (both purine & pyrimidine). The –OH group on C2 of ribose is replaced by a H atom. It is catalyzed by ribonucleotide reductase. This enzyme is active only when cells have actively synthesizing DNA (preparative to cell division). The reaction also requires thioredoxin, thioredoxin reductase and NADPH. Ribonucleoside diphosphate (ADP, GDP, CDP, UDP) Ribonucleotide reductase Reduced Thioredoxin Oxidized Thioredoxin Deoxyribonucleoside diphosphate (dADP, dGDP, dCDP, dUDP) NADPH+H+NADP+ Thioredoxin reductase
  • 14. Purines (Adenine & guanine) are catabolised to uric acid. Purine Nucleotides are degraded by the pathway, in which first phosphate group is removed by the action of nucleotidase to give nucleoside. Then it is further degraded to uric acid as follows……
  • 15. AMP Nucleotidase H2O Adenosine Adenosine deaminase H2O NH3 Inosine Xanthine oxidase H2O H2O2 Xanthine Xanthine oxidase H2O Uric acid Hypoxanthine Nucleotide phosphorylase Pi GMP Pi Nucleotidase H2O Pi Guanosine Ribose-1-P Nucleotide phosphorylase Pi Ribose-1-P Guanine Guanase H2O2 ➢Xanthine oxidase contains FAD, molybdenum and iron. ➢It is found in liver and small intestine ➢X.O librates H2O2 which is harmfull to the tissues. ➢Catalase convert H2O2 to H2O
  • 16.
  • 17. Uric acid is the end product of purine catabolism. At physiological PH uric acid is mostly present in plasma as sodium urate which is in soluble form. The normal blood level of uric acid is 3-7 mg/dl. The daily excretion varies from 500-700mg. It excreted in to ways… Via Kidney: majority of uric acid is excreted via kidney (uricosuria). Via gut: Smaller amount of urate is excreted via gut, where it broken down by bacteria. Significance of Uric acid Uric acid plays an important role as antioxidant. It is very effective scavenger of free radicals. Its antioxidant property can be compared with vitamin C
  • 18. Due to ↓ U.A ExcretionDue to ↑ U.A synthesis Secondary due toPrimary idiopathic ✓Renal insufficiency ✓Metabolic acidosis ✓Lactic acidosis ✓Diabetes Mellitus ✓Starvation ✓ Unknown reason✓ PRPP synthetase ✓ PRPP amidotransferase ✓ HGPRTase Secondary due to Primary (genetic) ✓↑ Dietary intake ✓↑ Nucleic acid turnover ✓Various cancers Such as.. (Leukemia, polycythemia.) ✓Von Gierkes disease
  • 19. Gout is a metabolic disease associated with overproduction of uric acid. An elevated serum uric acid conc. is known as hyperuricemia In sever hyperuricemia, crystals of sodium urate get deposited in the soft tissues, particularly in the joints. Such deposits are commonly known as tophi. This causes inflammation in the joints resulting in the painful gouty arthritis. Sodium urate or uric acid may precipitate in kidneys and ureters that results in renal damage and stone formation. Prevalence of gout is about 3 per 1,000 persons. Mostly affecting males and post-menopausal womens are also equally susceptible.
  • 20. Tophi
  • 21. Gout is of two type… Primary gout Secondary gout Primary gout:- It is an inborn error of metabolism due to defect in enzymes of purine biosynthesis. Such as… PRPP synthetase PRPP amidotransferase HGPRTase Secondary gout:- It is due various diseases causing increased synthesis or decreased excretion of uric acid. ↑ Dietary intake ↑ Nucleic acid turnover Various cancers Such as.. (Leukemia, polycythemia.) starvation Renal insufficiency Lactic acidosis Diabetes Mellitus
  • 22. SecondaryPrimary (Genetic) Due to enzyme defect Due to decreased excretion Due to increased synthesis ✓Renal insufficiency ✓Lactic acidosis ✓Diabetes Mellitus ✓↑ Dietary intake ✓↑ Nucleic acid turnover ✓Various cancers Such as.. (Leukemia, polycythemia.) ✓Starvation ✓Von Gierkes disease ✓ PRPP synthetase ✓ PRPP amidotransferase ✓ HGPRTase
  • 23. Gout (Hyperuricemia) Secondary Due to decreased excretion Renal insufficiency Lactic acidosis Diabetes Mellitus Due to increased synthesis ↑ Dietary intake ↑ Nucleic acid turnover Various cancers Starvation Primary (Genetic) Due to enzyme defect in … - PRPP synthetase - PRPP amidotransferase - HGPRTase
  • 24. Gout can be treated combination of nutritional therapy and drug therapy. Foods rich in nucleotides and nucleic acids such as liver, coffeine and tea should restrict in the diet. And also the alcohol. Drug for the treatment of primary gout is allopurinol. Allopurinol is structural analog of hypoxanthine that competitively inhibits the enzyme xanthine oxidase. Allopurinol acts as suicide inhibitor in this reaction. It get oxidized to alloxanthine by XO. Alloxanthine is more effective inhibitor of XO. This leads to the accumulation of hypoxanthine and xanthine. These two compounds are more soluble than uric acid, hence easily excreaed in the urine.
  • 25. It is due to the deficiency of enzyme HGPRTase. It was first described in 1964 by Michael Lesch (a medical student) and Wiliam L. Nyhan (his teacher). It is an X-linked inherited disorder, that affect only males. In absence of HGPRTase, the salvage pathway is inoperative and purine cannot reconverted to nucleotides; instead they are degraded to uric acid. And also cause the accumulation of PRPP, which stimulate synthesis and degradation of purine. This results in increased conc of uric acid in plasma and urine
  • 26. Symptoms:- Hyperuricemia Neurological abnormalities such as… Mental retadation Aggressive behavior Learning disability Biting of fingers and lips (self-mutilation) Gout Urinary tract stones Treatment:- Allopurinol helps to reduces uric acid formation, has no affect on the neurological manifestation in these patients.
  • 27. Purine Nucleoside phosphorylase deficiency:- Purine Nucleoside phosphorylase deficiency is associated with impaired T-cell function with normal B-cell function. In the cells of patients with this deficiency, dGTP accumulates. Like dATP, dGTP allosteric inhibits ribonucleotide reductase. Both are autosomal recessive disorders with symptoms of recurrent and chronic infection.