Bio-IT Talk Summarizing Bio-IT World FAIR Hackathon!

1. Ben Busby, Ph.D.
Data Science Education Something…
NCBI et al
Founder, Department of Bioinformatics and Data Science, FAES
ben.busby@nih.gov, @dcgenomics, LinkedIn
Prototype ML Software for Analysis of RNAseq, and Development of RNAseq
for ML-ready Applications Developed in NIH-Hackathons!

2. Polygenic SNP Search Tool
https://github.com/NCBI-
Hackathons/PSST

3. 3

4. https://github.com/NCBI-
Hackathons/GenomicRobots

5. https://github.com/NCBI-Hackathons/Complex_Phenogeno

6. 6

7. phenvar.colorado.edu

8. 8

9. Combined score is
the average of SVs,
mappability, GC..
NCBI region list
Encode blacklist

11. https://github.com/NCBI-
Hackathons/ViruSpy

12. https://github.com/NCBI-
Hackathons/EndoVir

13. https://github.com/NCBI-
Hackathons/VirusFriends

14. 14

15. 15

16. 16

17. 17
Data Hackathons!

18. 18
Planned Events
RNAseq – UNC, March 11-13 2019;
Palo Alto, June 2019
Smaller events at USF and Pittsburgh
Human PanGenomics – UCSC, 25-27 March 2019;
Haplotype Annotation, Baltimore, June 2019
Variant Synthetic Dataset Generation –
Boston, April 15-16, 2019
AMR and Prokaryotic Genome Annotate-athon
NIH Campus, August 2019

19. 19
Virus Discovery!

20. Creating a Community
https://biohackathons.github.io
MACHINE LEARNING
PROJECT MANAGEMENT
PRODUCT MANAGEMENT

21. 21

22. 22

23. 23

24. 24

25. 25

26. 26

27. 27

28. 28

29. 29

30. 30
https://github.com/NCBI-Hackathons/personalgenomics

31. 31

32. 32