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Code for science (rev 2)
- 1. {Code}forScience Andrew Lenards December 6, 2010
- 3. Andrew Lenards iPlant Collaborative on Core S/W team University of Arizona CS Grad, 2001 Experienced developer, former consultant, instructor, & technical trainer Domain experience: Motor Vehicle Domain Phylogenetics / Bioinformatics (sort of)
- 4. Andrew Lenards - Activities Learning about: Requirements, User Stories, etc. S/W Design/Architecture, Patterns, SOA Molecular Biology, Phylogenetics, Phyloinformatics, Genetics, and Genomics Active in: Tucson Java Users Group Semi-active in: Tucson Startup Drinks Ubuntu Arizona Local Community / TFUG
- 8. Hybrid Vigor
- 14. Bio________
- 15. Biofuels
- 16. Biochemistry
- 17. Biophysics
- 18. Bioinformatics
- 19. …
- 25. What do you expectwhen you graduate?
- 26. … for the computer sciencemajors
- 30. Myth of the Lone Developer
- 32. in-practice: lots of interaction w/ technical&non-technical people
- 33. Take Away: Communication is amajor challenge
- 34. What might help?
- 37. … quite often
- 38. Why?
- 39. P00R(0/|1(4710|
- 40. Speaking in tongues is not allowed
- 41. Adaption
- 44. I wasn’t always interested in science/biology
- 45. Biology is an interesting domain
- 47. I know too much aboutAuto titling & international trucking fees
- 48. I know knew too muchaboutAuto titling & international trucking fees
- 50. Miscellaneous Info Contact Info Traditional: lenards@iplantcollaborative.org lenards@email.arizona.edu Hipster: @alenards Slides are posted here: http://www.slideshare.net/lenards
- 52. … of the community, by the community, for the community
- 53. Empowering the next generation of biologist
- 54. Why?
- 55. The world faces tough problems in the future
- 56. Fuel/Energy
- 57. Food
- 58. Water Supply
- 59. …
- 62. “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.”
- 63. Large systems designleads to diverse,interdisciplinary teams
- 64. With the direction of Computational Biology & Bioinformatics…
- 66. Software Development as aCollaborative Game
- 67. Soft skills are important
- 68. Speaking in tongues is not allowed
- 69. Working in pairs, not just forpair-programming ordebugging
- 70. Impromptu design discussions (they often include more than just technical folks)
- 71. Image Acknowledgements “Mad Scientist Photo” of Andrew by Alex Yelich http://www.flickr.com/photos/sskennel/4496534369/ http://upload.wikimedia.org/wikipedia/commons/3/32/Charles_Darwin_by_Elliott_and_Fry.jpg http://en.wikipedia.org/wiki/File:Koeh-283.jpg http://jitterypenguin.com/images01/SWG%20Screenshots/Zoee/Master%20Commando%20Skill%20Tree.jpg http://www.flickr.com/photos/tonivc/2283676770/ http://www.flickr.com/photos/designbyfront/3428784075/ http://www.flickr.com/photos/lorelei-ranveig/2294093649/ http://www.flickr.com/photos/mathoov/4040824373/ http://www.flickr.com/photos/thatgrumguy/402041540/ http://www.flickr.com/photos/freya_gefn/2777209147/ http://www.flickr.com/photos/pkmousie/2652404430/ http://www.flickr.com/photos/sklathill/479528238/ http://commons.wikimedia.org/wiki/File:Babel_fish_badge.jpg http://www.teachforamerica.org/assets/images/img/logo_tfa.gif http://www.flickr.com/photos/roadsidepictures/389828793/ “Take Away” font: http://www.dafont.com/mailart-rubberstamp.font
- 72. The content of this work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike License. Your use of this material constitutes acceptance of that license and the conditions of use of materials on this site: http://creativecommons.org/licenses/by-nc-sa/3.0/
Notes de l'éditeur
- Originally prepared for UBRP group session - http://ubrp.arizona.edu/
- When people hear “hybrid” they usually think of cars, and likely the ToyotaPrius.http://www.flickr.com/photos/sskennel/4496534369/
- Darwin studied hybrid vigorhttp://upload.wikimedia.org/wikipedia/commons/3/32/Charles_Darwin_by_Elliott_and_Fry.jpg
- Major of corn grown worldwide is from hybridshttp://en.wikipedia.org/wiki/File:Koeh-283.jpg
- Successful combinations
- It seems like computer science and computational thinking are creating plenty of hybrid disciplines now
- Okay – that was a bogus one. Computational Gardening is a horrible idea.
- But computational approaches are not only ones creating new disciplines. Biology is have a major impact.
- And the list goes on…. And on.
- Games usually have some limiting factor so that user-controlled characters cannot specialize in everything. This is an example from Star Wars Galaxies and how they controlled user characters by imposing a skill tree.http://jitterypenguin.com/images01/SWG%20Screenshots/Zoee/Master%20Commando%20Skill%20Tree.jpg
- What limits you? Time, attention, energy… http://www.flickr.com/photos/tonivc/2283676770/
- No one person can be a master of all the skills needed to produce large, scalable systems to support biology, bioinformatics, or computational biologyhttp://www.flickr.com/photos/lorelei-ranveig/2294093649/
- Douglas Rushkoff –"Program or be Programmed: Ten Commands for a Digital Age”http://www.flickr.com/photos/designbyfront/3428784075
- Photo taken at Startup School 2009 at UC Berkeley.Some rights reserved by Mathieu Thouvenin -> http://www.flickr.com/photos/mathoov/4040824373/sizes/l/
- http://www.flickr.com/photos/thatgrumguy/402041540/
- http://www.flickr.com/photos/pkmousie/2652404430/
- http://www.flickr.com/photos/sklathill/479528238/
- If you’re dealing with non-technical, technical folks who are not familiar with your expertise then how do expect to be successful communicating?
- Beyond patience and plain, approachable explanation – maybe a technical savvy implementation of the Babel fishhttp://commons.wikimedia.org/wiki/File:Babel_fish_badge.jpg
- Why do many software project fail? Communication and misunderstandings.
- Poor communication and misunderstandings.
- Why do many software project fail? Communication and misunderstandings. Project need to adaption.
- I previously worked in the motor vehicle domain on projects that involved proportioned registration for international trucking. http://www.flickr.com/photos/roadsidepictures/389828793/
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “Ideas worth spreading” … the recent TEDxTucson centered around innovation in the area of green technology.
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- “In scientific usage, cyberinfrastructure is a technological solution to the problem of efficiently connecting data, computers, and people with the goal of enabling derivation of novel scientific theories and knowledge.” src: http://en.wikipedia.org/wiki/Cyberinfrastructure
- The knowledge of many is needed to solve the grand challenges facing biology and bioinformatics. http://www.flickr.com/photos/lorelei-ranveig/2294093649/